近年重要著作 (2013- ):
Lin YJ and Tzeng WN （2018）Modelling the bycatch of Anguilla marmorata using a generalized depletion model with an example from the Taiwanese glass eel fisheries for Anguilla japonica. Fish. Res. 208:210-218.
Ložys L, Shiao JC, Iizuka Y, Minde A, Pūtys Ž, Jakubavičiūtė E, Dainys J, Gorfine H and Tzeng WN (2017) Habitat use and migratory behaviour of pikeperch Sander lucioperca in Lithuanian and Latvian waters as inferred from otolith Sr:Ca ratios. Estuar Coast Shelf Sci 198:43–52.
Lin YJ, Tzeng WN, Han YS and Roa-Ureta RH (2017) A stock assessment model for transit stock fisheries with explicit immigration and emigration dynamics: application to upstream waves of glass eels. Fish. Res. 195: 130-140.
Lin YJ, Jessop BM, Weyl OLF, Iizuka Y, Lin SH and Tzeng WN（2015） Migratory history of African longfinned eel Anguilla mossambica from Maningory River, Madagascar: discovery of a unique pattern in otolith Sr:Ca ratios. Environ. Biol. 98( 1): 457–468.
Lin YJ, Chang YJ, and Tzeng WN （2015） Sensitivity of yield-per-recruit and spawning biomass per-recruit models to bias and imprecision in life history parameters: an example based on life history parameters of Japanese eel （Anguilla japonica）. Fish. Bull. 113:302–312.
Leander NJ, Wang YT, Yeh MF and Tzeng WN （2014） The largest giant mottled eel Anguilla marmorata discovered in Taiwan. TW J. Biodivers 16 （1）: 77 - 84.
Capoccioni F, Lee DY, Iizuka Y, Tzeng WN and Ciccotti E （2014）. Phenotypic plasticity in habitat use and growth of the European eel（Anguilla anguilla） in transitional waters in the Mediterranean area. Ecol. Freshw. Fish 23: 65–76
Lin YT, Wang CH, You CF, and Tzeng WN （2013）Ba/Ca ratios in otoliths of southern bluefin tuna （Thunnus maccoyii） as a biological tracer of upwelling in the Great Australian Bight. J Mar Sci Tech. 20（6）:733-741
Leander NJ, Tzeng WN, Yeh NT, Shen KN and Han YS （2013）Effect of metamorphosis timing and larval growth rate on the latitudinal distribution of the sympatric freshwater eels, Anguilla japonica and A. marmorata, in the western North Pacific. Zool. Stud. 52:30
專書：
曾萬年 著(2018) 魚類耳石: 探索神秘的魚類生活史。五南圖書出版公司，456頁。
曾萬年、韓玉山、塚本勝巳、黑木真理 著（2012）鰻魚傳奇。宜蘭縣立蘭陽博物館出版，232頁。
曾萬年編著 (2010) 鰻魚生活史及保育論文集(上、下冊)。國立臺灣大學圖書館｢臺大人｣文庫收藏。
曾萬年編著 (2010) 漁業生物學及生態學(第一至第四冊) 。國立臺灣大學圖書館｢臺大人｣文庫收藏。
曾萬年等 編著（2008）隱藏在魚類內耳裡的生活史秘密--耳石的構造和微化學及其生態應用。國立臺灣大學漁業科學研究所，93頁。
曾萬年總校閱（2001）動物學(上、下冊) 。藝軒圖書出版社。
曾萬年編譯（1990）海洋的科學: 探索浩瀚的海洋。明文出版社。
專書論文：
Tzeng WN (2016). Chapter 15 Fisheries, stocks decline and conservation ofAnguillid Eel. In: Arai T (ed) Biology and Ecology of Anguillid Eels, pp291-324. CRC press, USA.
Panfili J et al. 20 persons (2016) Chapter 21Grey mullet as possible indicatorof coastal environmental changes : the MUGIL Project, pp.514–521. In: D. Crosetti & S. Blaber (eds.) Biology, Ecology and Culture of Grey Mullets (Mugilidae), CRC Press USA.
Tzeng WN (2014). Chapter 9 Freshwater Eels and Humans in Taiwan, pp129-142. In:Tsukamoto K and Kuroki M (eds) Eels and Humans. Springer, Japan.
Tzeng WN （2003）Chapter 13 The processes of onshore migration of theJapanese eel Anguilla japonica as revealed by otolith microstructure, pp181-190. In: A. Aida, K. Tsukamoto, K. Yamauchi（Eds） Advanced in Eel Biology. Springer, Tokyo, Japan.